abyss
Install command:
brew install abyssGenome sequence assembler for short reads
https://www.bcgsc.ca/resources/software/abyss
License: GPL-3.0-only AND LGPL-2.1-or-later AND MIT AND BSD-3-Clause
Formula JSON API: /api/formula/abyss.json
Formula code: abyss.rb on GitHub
Bottle (binary package) installation support provided for:
| Apple Silicon | sequoia | ✅ |
|---|---|---|
| sonoma | ✅ | |
| ventura | ✅ | |
| Intel | sonoma | ✅ |
| ventura | ✅ | |
| 64-bit linux | ✅ | |
Current versions:
| stable | ✅ | 2.3.10 |
| head | ⚡️ | HEAD |
Depends on:
| gcc | 14.2.0 | GNU compiler collection |
| open-mpi | 5.0.6 | High performance message passing library |
Depends on when building from source:
| boost | 1.87.0 | Collection of portable C++ source libraries |
| cmake | 3.31.3 | Cross-platform make |
| google-sparsehash | 2.0.4 | Extremely memory-efficient hash_map implementation |
| meson | 1.6.1 | Fast and user friendly build system |
| ninja | 1.12.1 | Small build system for use with gyp or CMake |
| python@3.13 | 3.13.1 | Interpreted, interactive, object-oriented programming language |
Analytics:
| Installs (30 days) | |
|---|---|
abyss |
33 |
| Installs on Request (30 days) | |
abyss |
32 |
| Build Errors (30 days) | |
abyss |
0 |
| Installs (90 days) | |
abyss |
155 |
abyss --HEAD |
1 |
| Installs on Request (90 days) | |
abyss |
150 |
abyss --HEAD |
1 |
| Installs (365 days) | |
abyss |
1,184 |
abyss --HEAD |
1 |
| Installs on Request (365 days) | |
abyss |
1,171 |
abyss --HEAD |
1 |
