abyss

Install command:
brew install abyss

Genome sequence assembler for short reads

https://www.bcgsc.ca/resources/software/abyss

License: GPL-3.0-only AND LGPL-2.1-or-later AND MIT AND BSD-3-Clause

Formula JSON API: /api/formula/abyss.json

Formula code: abyss.rb on GitHub

Bottle (binary package) installation support provided for:

Apple Silicon sequoia
sonoma
ventura
Intel sonoma
ventura
64-bit linux

Current versions:

stable 2.3.10
head ⚡️ HEAD

Depends on:

gcc 14.2.0 GNU compiler collection
open-mpi 5.0.6 High performance message passing library

Depends on when building from source:

boost 1.86.0 Collection of portable C++ source libraries
cmake 3.31.1 Cross-platform make
google-sparsehash 2.0.4 Extremely memory-efficient hash_map implementation
meson 1.6.0 Fast and user friendly build system
ninja 1.12.1 Small build system for use with gyp or CMake
python@3.13 3.13.0 Interpreted, interactive, object-oriented programming language

Analytics:

Installs (30 days)
abyss 37
Installs on Request (30 days)
abyss 34
Build Errors (30 days)
abyss 0
Installs (90 days)
abyss 239
abyss --HEAD 1
Installs on Request (90 days)
abyss 234
abyss --HEAD 1
Installs (365 days)
abyss 1,283
abyss --HEAD 1
Installs on Request (365 days)
abyss 1,270
abyss --HEAD 1
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