abyss
Install command:
brew install abyssGenome sequence assembler for short reads
https://www.bcgsc.ca/resources/software/abyss
License: GPL-3.0-only and LGPL-2.1-or-later and MIT and BSD-3-Clause
Formula JSON API: /api/formula/abyss.json
Bottle JSON API: /api/bottle/abyss.json
Formula code: abyss.rb on GitHub
Bottle (binary package) installation support provided for:
| Intel | monterey | ✅ |
|---|---|---|
| big sur | ✅ | |
| catalina | ✅ | |
| 64-bit linux | ✅ | |
| Apple Silicon | monterey | ✅ |
| big sur | ✅ | |
Current versions:
| stable | ✅ | 2.3.5 |
| head | ⚡️ | HEAD |
Revision: 1
Depends on:
| gcc | 12.2.0 | GNU compiler collection |
| open-mpi | 4.1.4 | High performance message passing library |
Depends on when building from source:
| boost | 1.79.0 | Collection of portable C++ source libraries |
| google-sparsehash | 2.0.4 | Extremely memory-efficient hash_map implementation |
Analytics (macOS):
| Installs (30 days) | |
|---|---|
abyss |
40 |
| Installs on Request (30 days) | |
abyss |
38 |
| Build Errors (30 days) | |
abyss |
0 |
| Installs (90 days) | |
abyss |
136 |
| Installs on Request (90 days) | |
abyss |
134 |
| Installs (365 days) | |
abyss |
613 |
| Installs on Request (365 days) | |
abyss |
604 |
Analytics (Linux):
| Installs (30 days) | |
|---|---|
abyss |
334 |
| Installs on Request (30 days) | |
abyss |
334 |
| Build Errors (30 days) | |
abyss |
0 |
| Installs (90 days) | |
abyss |
715 |
| Installs on Request (90 days) | |
abyss |
714 |
| Installs (365 days) | |
abyss |
2,077 |
| Installs on Request (365 days) | |
abyss |
2,072 |
