abyss
Install command:
brew install abyssGenome sequence assembler for short reads
https://www.bcgsc.ca/resources/software/abyss
License: GPL-3.0-only AND LGPL-2.1-or-later AND MIT AND BSD-3-Clause
Development: Pull requests
Formula JSON API: /api/formula/abyss.json
Formula code: abyss.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
tahoe | ✅ |
|---|---|---|
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ | |
Current versions:
| stable | ✅ | 2.3.10 |
| head | ⚡️ | HEAD |
Revision: 1
Depends on:
| btllib | 1.7.8 | Bioinformatics Technology Lab common code library |
| open-mpi | 5.0.9 | High performance message passing library |
| libomp | 22.1.8 | LLVM's OpenMP runtime library |
Depends on when building from source:
| boost | 1.92.0 | Collection of portable C++ source libraries |
| google-sparsehash | 2.0.4 | Extremely memory-efficient hash_map implementation |
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 7 | 112 | 331 |
| Installs on Request | 7 | 112 | 325 |
| Build Errors | 0 |