brew install abyss
Genome sequence assembler for short reads
https://www.bcgsc.ca/resources/software/abyss
License: GPL-3.0-only and LGPL-2.1-or-later and MIT and BSD-3-Clause
Formula JSON API: /api/formula/abyss.json
Bottle JSON API: /api/bottle/abyss.json
Formula code: abyss.rb
on GitHub
Bottle (binary package) installation support provided for:
Intel | monterey | ✅ |
---|---|---|
big sur | ✅ | |
catalina | ✅ | |
64-bit linux | ✅ | |
Apple Silicon | monterey | ✅ |
big sur | ✅ |
Current versions:
stable | ✅ | 2.3.5 |
head | ⚡️ | HEAD |
Depends on:
gcc | 11.3.0 | GNU compiler collection |
open-mpi | 4.1.3 | High performance message passing library |
Depends on when building from source:
boost | 1.78.0 | Collection of portable C++ source libraries |
google-sparsehash | 2.0.4 | Extremely memory-efficient hash_map implementation |
Analytics (macOS):
Installs (30 days) | |
---|---|
abyss |
71 |
Installs on Request (30 days) | |
abyss |
69 |
Build Errors (30 days) | |
abyss |
0 |
Installs (90 days) | |
abyss |
139 |
Installs on Request (90 days) | |
abyss |
134 |
Installs (365 days) | |
abyss |
564 |
Installs on Request (365 days) | |
abyss |
553 |
Analytics (Linux):
Installs (30 days) | |
---|---|
abyss |
318 |
Installs on Request (30 days) | |
abyss |
317 |
Build Errors (30 days) | |
abyss |
0 |
Installs (90 days) | |
abyss |
548 |
Installs on Request (90 days) | |
abyss |
545 |
Installs (365 days) | |
abyss |
2,184 |
Installs on Request (365 days) | |
abyss |
2,178 |