Install command:
brew install abyss

Genome sequence assembler for short reads


License: GPL-3.0-only and LGPL-2.1-or-later and MIT and BSD-3-Clause

Formula JSON API: /api/formula/abyss.json

Formula code: abyss.rb on GitHub

Bottle (binary package) installation support provided for:

Apple Silicon sonoma
big sur
Intel sonoma
big sur
64-bit linux

Current versions:

stable 2.3.7
head ⚡️ HEAD

Depends on:

gcc 13.2.0 GNU compiler collection
open-mpi 4.1.5 High performance message passing library

Depends on when building from source:

boost 1.82.0 Collection of portable C++ source libraries
cmake 3.27.6 Cross-platform make
google-sparsehash 2.0.4 Extremely memory-efficient hash_map implementation
meson 1.2.2 Fast and user friendly build system
ninja 1.11.1 Small build system for use with gyp or CMake
python@3.11 3.11.5 Interpreted, interactive, object-oriented programming language


Installs (30 days)
abyss 75
Installs on Request (30 days)
abyss 73
Build Errors (30 days)
abyss 0
Installs (90 days)
abyss 207
Installs on Request (90 days)
abyss 204
Installs (365 days)
abyss 629
Installs on Request (365 days)
abyss 621
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