Install command:
brew install abyss

Genome sequence assembler for short reads


License: GPL-3.0-only and LGPL-2.1-or-later and MIT and BSD-3-Clause

Formula JSON API: /api/formula/abyss.json

Formula code: abyss.rb on GitHub

Bottle (binary package) installation support provided for:

Intel ventura
big sur
64-bit linux
Apple Silicon ventura
big sur

Current versions:

stable 2.3.7
head ⚡️ HEAD

Depends on:

gcc 13.1.0 GNU compiler collection
open-mpi 4.1.5 High performance message passing library

Depends on when building from source:

boost 1.81.0 Collection of portable C++ source libraries
cmake 3.26.4 Cross-platform make
google-sparsehash 2.0.4 Extremely memory-efficient hash_map implementation
meson 1.1.1 Fast and user friendly build system
ninja 1.11.1 Small build system for use with gyp or CMake
python@3.11 3.11.3 Interpreted, interactive, object-oriented programming language


Installs (30 days)
abyss 48
Installs on Request (30 days)
abyss 35
Build Errors (30 days)
abyss 18

Analytics (macOS):

Installs (90 days)
abyss 1
Installs on Request (90 days)
abyss 1
Installs (365 days)
abyss 312
Installs on Request (365 days)
abyss 309

Analytics (Linux):

Installs (90 days)
abyss 0
Installs on Request (90 days)
abyss 0
Installs (365 days)
abyss 1,772
Installs on Request (365 days)
abyss 1,764
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