abyss

Install command:
brew install abyss

Genome sequence assembler for short reads

https://www.bcgsc.ca/resources/software/abyss

License: GPL-3.0-only and LGPL-2.1-or-later and MIT and BSD-3-Clause

Formula JSON API: /api/formula/abyss.json

Formula code: abyss.rb on GitHub

Bottle (binary package) installation support provided for:

Apple Silicon sonoma
ventura
monterey
big sur
Intel sonoma
ventura
monterey
big sur
64-bit linux

Current versions:

stable 2.3.7
head ⚡️ HEAD

Depends on:

gcc 13.2.0 GNU compiler collection
open-mpi 5.0.3 High performance message passing library

Depends on when building from source:

boost 1.84.0 Collection of portable C++ source libraries
cmake 3.29.2 Cross-platform make
google-sparsehash 2.0.4 Extremely memory-efficient hash_map implementation
meson 1.4.0 Fast and user friendly build system
ninja 1.12.0 Small build system for use with gyp or CMake
python@3.12 3.12.3 Interpreted, interactive, object-oriented programming language

Analytics:

Installs (30 days)
abyss 112
Installs on Request (30 days)
abyss 111
Build Errors (30 days)
abyss 0
Installs (90 days)
abyss 281
Installs on Request (90 days)
abyss 279
Installs (365 days)
abyss 1,424
Installs on Request (365 days)
abyss 1,409
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