abyss

Install command:
brew install abyss

Genome sequence assembler for short reads

https://www.bcgsc.ca/resources/software/abyss

License: GPL-3.0-only and LGPL-2.1-or-later and MIT and BSD-3-Clause

/api/formula/abyss.json (JSON API)

/api/bottle/abyss.json (Bottle JSON API)

Formula code on GitHub

Bottle (binary package) installation support provided for macOS releases:

Intel big sur
catalina
mojave
64-bit linux
Apple Silicon big sur

Current versions:

stable 2.3.1
head ⚡️ HEAD

Revision: 1

Depends on:

open-mpi 4.1.1 High performance message passing library
gcc 11.2.0 GNU compiler collection

Depends on when building from source:

boost 1.76.0 Collection of portable C++ source libraries
google-sparsehash 2.0.4 Extremely memory-efficient hash_map implementation

Analytics:

Installs (30 days)
abyss 32
Installs on Request (30 days)
abyss 30
Build Errors (30 days)
abyss 0
Installs (90 days)
abyss 93
Installs on Request (90 days)
abyss 90
Installs (365 days)
abyss 544
Installs on Request (365 days)
abyss 538
Fork me on GitHub