abyss

Genome sequence assembler for short reads

http://www.bcgsc.ca/platform/bioinfo/software/abyss

Current versions:

stable 2.1.0
head ⚡️ HEAD
bottle 🍾 high_sierra, sierra, el_capitan

Revision: 1

Depends on:

gcc 8.1.0 GNU compiler collection
open-mpi 3.1.0 High performance message passing library

Depends on when building from source:

boost 1.67.0 Collection of portable C++ source libraries
google-sparsehash 2.0.3 Extremely memory-efficient hash_map implementation

JSON API for abyss

Formula code on GitHub

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