abyss

Install command:
brew install abyss

Genome sequence assembler for short reads

https://www.bcgsc.ca/resources/software/abyss

License: GPL-3.0-only and LGPL-2.1-or-later and MIT and BSD-3-Clause

Formula JSON API: /api/formula/abyss.json

Bottle JSON API: /api/bottle/abyss.json

Formula code: abyss.rb on GitHub

Bottle (binary package) installation support provided for:

Intel monterey
big sur
catalina
64-bit linux
Apple Silicon monterey
big sur

Current versions:

stable 2.3.5
head ⚡️ HEAD

Depends on:

gcc 11.3.0 GNU compiler collection
open-mpi 4.1.3 High performance message passing library

Depends on when building from source:

boost 1.78.0 Collection of portable C++ source libraries
google-sparsehash 2.0.4 Extremely memory-efficient hash_map implementation

Analytics (macOS):

Installs (30 days)
abyss 71
Installs on Request (30 days)
abyss 69
Build Errors (30 days)
abyss 0
Installs (90 days)
abyss 139
Installs on Request (90 days)
abyss 134
Installs (365 days)
abyss 564
Installs on Request (365 days)
abyss 553

Analytics (Linux):

Installs (30 days)
abyss 318
Installs on Request (30 days)
abyss 317
Build Errors (30 days)
abyss 0
Installs (90 days)
abyss 548
Installs on Request (90 days)
abyss 545
Installs (365 days)
abyss 2,184
Installs on Request (365 days)
abyss 2,178
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