augustus
Install command:
brew install augustusPredict genes in eukaryotic genomic sequences
https://bioinf.uni-greifswald.de/augustus/
License: Artistic-1.0
Development: Pull requests
Formula JSON API: /api/formula/augustus.json
Formula code: augustus.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
golden gate | ✅ |
|---|---|---|
| tahoe | ✅ | |
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 3.5.0 |
| head | ⚡️ | HEAD |
Revision: 13
Depends on:
| bamtools | 2.5.3 | C++ API and command-line toolkit for BAM data |
| boost | 1.92.0 | Collection of portable C++ source libraries |
| htslib | 1.24 | C library for high-throughput sequencing data formats |
Uses from macOS: python (build)
Binaries:
aln2wig,
augustus,
bam2hints,
bam2wig,
compileSpliceCands,
etraining,
fastBlockSearch,
filterBam,
homGeneMapping,
joingenes,
pp_simScore,
prepareAlign
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 0 | 41 | 194 |
| Installs on Request | 0 | 40 | 187 |
| Build Errors | 0 |