bedops
brew install bedopsSet and statistical operations on genomic data of arbitrary scale
https://github.com/bedops/bedops
License: GPL-2.0-or-later
Development: Pull requests
Formula JSON API: /api/formula/bedops.json
Formula code: bedops.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
golden gate | ✅ |
|---|---|---|
| tahoe | ✅ | |
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 2.4.42 |
Depends on:
| jansson | 2.15.1 | C library for encoding, decoding, and manipulating JSON |
Uses from macOS: bzip2
Binaries:
bam2bed,
bam2bed_gnuParallel,
bam2bed_sge,
bam2bed_slurm,
bam2starch,
bam2starch_gnuParallel,
bam2starch_sge,
bam2starch_slurm,
bedextract,
bedmap,
bedops,
closest-features,
convert2bed,
gff2bed,
gff2starch,
gtf2bed,
gtf2starch,
gvf2bed,
gvf2starch,
psl2bed,
psl2starch,
rmsk2bed,
rmsk2starch,
sam2bed,
sam2starch,
sort-bed,
starch,
starch-diff,
starchcat,
starchcluster_gnuParallel,
starchcluster_sge,
starchcluster_slurm,
starchstrip,
unstarch,
update-sort-bed-migrate-candidates,
update-sort-bed-slurm,
update-sort-bed-starch-slurm,
vcf2bed,
vcf2starch,
wig2bed,
wig2starch
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 1 | 11 | 120 |
| Installs on Request | 1 | 11 | 120 |
| Build Errors | 0 |