bedtools
brew install bedtoolsTools for genome arithmetic (set theory on the genome)
https://github.com/arq5x/bedtools2
License: MIT
Development: Pull requests
Formula JSON API: /api/formula/bedtools.json
Formula code: bedtools.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
golden gate | ✅ |
|---|---|---|
| tahoe | ✅ | |
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 2.31.1 |
Depends on:
| xz | 5.8.4 | General-purpose data compression with high compression ratio |
Uses from macOS: python (build), bzip2
Binaries:
annotateBed,
bamToBed,
bamToFastq,
bed12ToBed6,
bedToBam,
bedToIgv,
bedpeToBam,
bedtools,
closestBed,
clusterBed,
complementBed,
coverageBed,
expandCols,
fastaFromBed,
flankBed,
genomeCoverageBed,
getOverlap,
groupBy,
intersectBed,
linksBed,
mapBed,
maskFastaFromBed,
mergeBed,
multiBamCov,
multiIntersectBed,
nucBed,
pairToBed,
pairToPair,
randomBed,
shiftBed,
shuffleBed,
slopBed,
sortBed,
subtractBed,
tagBam,
unionBedGraphs,
windowBed,
windowMaker
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 57 | 248 | 1,428 |
Installs (--HEAD) | 0 | 0 | 4 |
| Installs on Request | 54 | 233 | 1,379 |
Installs on Request (--HEAD) | 0 | 0 | 4 |
| Build Errors | 0 |