bowtie2
Install command:
brew install bowtie2Fast and sensitive gapped read aligner
https://bowtie-bio.sourceforge.net/bowtie2/index.shtml
License: GPL-3.0-or-later
Development: Pull requests
Formula JSON API: /api/formula/bowtie2.json
Formula code: bowtie2.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
golden gate | ✅ |
|---|---|---|
| tahoe | ✅ | |
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 2.5.5 |
Depends on when building from source:
| simde | 0.8.2 | Implementations of SIMD intrinsics for systems which don't natively support them |
Uses from macOS: perl, python
Binaries:
bowtie2,
bowtie2-align-l,
bowtie2-align-s,
bowtie2-build,
bowtie2-build-l,
bowtie2-build-s,
bowtie2-inspect,
bowtie2-inspect-l,
bowtie2-inspect-s
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 45 | 751 | 1,508 |
Installs (--HEAD) | 0 | 0 | 4 |
| Installs on Request | 44 | 718 | 1,376 |
Installs on Request (--HEAD) | 0 | 0 | 4 |
| Build Errors | 0 |