kallisto

Install command: 
brew install kallisto

Quantify abundances of transcripts from RNA-Seq data

https://pachterlab.github.io/kallisto/

License: BSD-2-Clause

Development: Pull requests

Formula JSON API: /api/formula/kallisto.json

Formula code: kallisto.rb on GitHub

Bottle (binary package) installation support provided for:

macOS on
Apple Silicon		 golden gate ✅
tahoe ✅
sequoia ✅
sonoma ✅
macOS on
Intel		 sonoma ✅
Linux ARM64 ✅
x86_64 ✅

Current versions:

stable ✅ 0.52.0

Patches:

https://github.com/pachterlab/kallisto/commit/a5caefb608611c48e102d63e91eafd3660d3e569
https://github.com/pachterlab/kallisto/commit/e79245b1386d984849f2274fd2287a85682991bc

Depends on:

hdf5 2.2.0 File format designed to store large amounts of data

Depends on when building from source:

cmake 4.4.5 Cross-platform make

Binaries: kallisto

Analytics:

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Installs1338338
Installs on Request1338338
Build Errors0