proteinortho
brew install proteinorthoDetecting orthologous genes within different species
https://gitlab.com/paulklemm_PHD/proteinortho
License: GPL-3.0-or-later
Development: Pull requests
Formula JSON API: /api/formula/proteinortho.json
Formula code: proteinortho.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
golden gate | ✅ |
|---|---|---|
| tahoe | ✅ | |
| sequoia | ✅ | |
| sonoma | ✅ | |
| ventura | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| ventura | ✅ | |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 6.3.6 |
Depends on:
| diamond | 2.2.6 | Accelerated BLAST compatible local sequence aligner |
| openblas | 0.3.34 | Optimized BLAS library |
| libomp | 23.1.1 | LLVM's OpenMP runtime library |
Binaries:
proteinortho,
proteinortho2html.pl,
proteinortho2tree.pl,
proteinortho2xml.pl,
proteinortho6.pl,
proteinortho_cleanupblastgraph,
proteinortho_clustering,
proteinortho_compareProteinorthoGraphs.pl,
proteinortho_do_mcl.pl,
proteinortho_extract_from_graph.pl,
proteinortho_ffadj_mcs.py,
proteinortho_formatUsearch.pl,
proteinortho_grab_proteins.pl,
proteinortho_graphMinusRemovegraph,
proteinortho_history.pl,
proteinortho_singletons.pl,
proteinortho_summary.pl
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 3 | 32 | 167 |
| Installs on Request | 3 | 32 | 167 |
| Build Errors | 0 |