samtools
brew install samtoolsTools for manipulating next-generation sequencing data
License: MIT
Development: Pull requests
Formula JSON API: /api/formula/samtools.json
Formula code: samtools.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
golden gate | ✅ |
|---|---|---|
| tahoe | ✅ | |
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 1.24 |
Depends on:
| htslib | 1.24 | C library for high-throughput sequencing data formats |
Uses from macOS: ncurses
Binaries:
ace2sam,
blast2sam.pl,
bowtie2sam.pl,
export2sam.pl,
fasta-sanitize.pl,
interpolate_sam.pl,
maq2sam-long,
maq2sam-short,
md5fa,
md5sum-lite,
novo2sam.pl,
plot-ampliconstats,
plot-bamstats,
psl2sam.pl,
sam2vcf.pl,
samtools,
samtools.pl,
seq_cache_populate.pl,
soap2sam.pl,
wgsim,
wgsim_eval.pl,
zoom2sam.pl
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 220 | 1,078 | 4,893 |
Installs (--HEAD) | 0 | 1 | 7 |
| Installs on Request | 207 | 1,031 | 4,791 |
Installs on Request (--HEAD) | 0 | 1 | 7 |
| Build Errors | 0 |