somalier
Install command:
brew install somalierRelatedness, QC and ancestry checks from BAM/CRAM/VCF
https://github.com/brentp/somalier
License: MIT
Development: Pull requests
Formula JSON API: /api/formula/somalier.json
Formula code: somalier.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
golden gate | ✅ |
|---|---|---|
| tahoe | ✅ | |
| sequoia | ✅ | |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 0.3.5 |
| head | ⚡️ | HEAD |
Depends on:
| htslib | 1.24 | C library for high-throughput sequencing data formats |
| libdeflate | 1.26 | Heavily optimized DEFLATE/zlib/gzip compression and decompression |
| openssl@3 | 3.6.4 | Cryptography and SSL/TLS Toolkit |
| xz | 5.8.4 | General-purpose data compression with high compression ratio |
Depends on when building from source:
| nim | 2.2.12 | Statically typed compiled systems programming language |
Uses from macOS: bzip2, curl, zlib
Binaries:
somalier
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 0 | 16 | 16 |
| Installs on Request | 0 | 16 | 16 |
| Build Errors | 0 |