spades
brew install spadesDe novo genome sequence assembly
https://ablab.github.io/spades/
License: GPL-2.0-only
Development: Pull requests
Formula JSON API: /api/formula/spades.json
Formula code: spades.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
golden gate | ✅ |
|---|---|---|
| tahoe | ✅ | |
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 4.3.0 |
| head | ⚡️ | HEAD |
Depends on:
| python@3.14 | 3.14.7 | Interpreted, interactive, object-oriented programming language |
| libomp | 23.1.1 | LLVM's OpenMP runtime library |
Depends on when building from source:
| cmake | 4.4.3 | Cross-platform make |
Uses from macOS: bzip2 (build)
Binaries:
coronaspades.py,
metaplasmidspades.py,
metaspades.py,
metaviralspades.py,
plasmidspades.py,
rnaspades.py,
rnaviralspades.py,
spades-bwa,
spades-convert-bin-to-fasta,
spades-core,
spades-corrector-core,
spades-gbuilder,
spades-gfa-split,
spades-gmapper,
spades-gsimplifier,
spades-hammer,
spades-ionhammer,
spades-kmer-estimating,
spades-kmercount,
spades-read-filter,
spades.py,
spades_init.py
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 19 | 108 | 393 |
| Installs on Request | 18 | 107 | 390 |
| Build Errors | 0 |