sratoolkit
brew install sratoolkitData tools for INSDC Sequence Read Archive
https://github.com/ncbi/sra-tools
License: LicenseRef-Homebrew-public-domain AND GPL-3.0-or-later AND MIT
Development: Pull requests
Formula JSON API: /api/formula/sratoolkit.json
Formula code: sratoolkit.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
golden gate | ✅ |
|---|---|---|
| tahoe | ✅ | |
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 3.4.1 |
| head | ⚡️ | HEAD |
Depends on:
| hdf5 | 2.2.0 | File format designed to store large amounts of data |
Depends on when building from source:
| cmake | 4.4.3 | Cross-platform make |
Uses from macOS: libxml2
Binaries:
abi-dump,
abi-dump.3,
abi-dump.3.4.1,
align-info,
align-info.3,
align-info.3.4.1,
check-corrupt,
check-corrupt.3,
check-corrupt.3.4.1,
fasterq-dump,
fasterq-dump-orig.3.4.1,
fasterq-dump.3,
fasterq-dump.3.4.1,
fastq-dump,
fastq-dump-orig.3.4.1,
fastq-dump.3,
fastq-dump.3.4.1,
illumina-dump,
illumina-dump.3,
illumina-dump.3.4.1,
kdbmeta,
kdbmeta.3,
kdbmeta.3.4.1,
ngs-pileup,
ngs-pileup.3,
ngs-pileup.3.4.1,
prefetch,
prefetch-orig.3.4.1,
prefetch.3,
prefetch.3.4.1,
rcexplain,
rcexplain.3,
rcexplain.3.4.1,
ref-variation,
ref-variation.3,
ref-variation.3.4.1,
sam-dump,
sam-dump-orig.3.4.1,
sam-dump.3,
sam-dump.3.4.1,
sff-dump,
sff-dump.3,
sff-dump.3.4.1,
sra-info,
sra-info.3,
sra-info.3.4.1,
sra-pileup,
sra-pileup-orig.3.4.1,
sra-pileup.3,
sra-pileup.3.4.1,
sra-search,
sra-search.3,
sra-search.3.4.1,
sra-stat,
sra-stat.3,
sra-stat.3.4.1,
srapath,
srapath-orig.3.4.1,
srapath.3,
srapath.3.4.1,
sratools,
sratools.3,
sratools.3.4.1,
test-sra,
test-sra.3,
test-sra.3.4.1,
var-expand,
var-expand.3,
var-expand.3.4.1,
vdb-config,
vdb-config.3,
vdb-config.3.4.1,
vdb-decrypt,
vdb-decrypt.3,
vdb-decrypt.3.4.1,
vdb-dump,
vdb-dump-orig.3.4.1,
vdb-dump.3,
vdb-dump.3.4.1,
vdb-encrypt,
vdb-encrypt.3,
vdb-encrypt.3.4.1,
vdb-validate,
vdb-validate.3,
vdb-validate.3.4.1
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 58 | 212 | 1,308 |
Installs (--HEAD) | 0 | 0 | 4 |
| Installs on Request | 58 | 212 | 1,307 |
Installs on Request (--HEAD) | 0 | 0 | 4 |
| Build Errors | 0 |