vcflib
brew install vcflibC++ library and cmdline tools for parsing and manipulating VCF files
https://github.com/vcflib/vcflib
License: MIT
Development: Pull requests
Formula JSON API: /api/formula/vcflib.json
Formula code: vcflib.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
golden gate | ✅ |
|---|---|---|
| tahoe | ✅ | |
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 1.0.15 |
Depends on:
| htslib | 1.24 | C library for high-throughput sequencing data formats |
| wfa2-lib | 2.3.6 | Wavefront alignment algorithm library v2 |
| xz | 5.8.4 | General-purpose data compression with high compression ratio |
| libomp | 23.1.1 | LLVM's OpenMP runtime library |
Depends on when building from source:
| cmake | 4.4.3 | Cross-platform make |
| pkgconf | 3.0.7 | Package compiler and linker metadata toolkit |
| pybind11 | 3.1.0 | Seamless operability between C++11 and Python |
| python@3.14 | 3.14.7 | Interpreted, interactive, object-oriented programming language |
Uses from macOS: bzip2
Binaries:
abba-baba,
bFst,
bed2region,
bgziptabix,
dumpContigsFromHeader,
genotypeSummary,
hapLrt,
iHS,
meltEHH,
normalize-iHS,
pFst,
pVst,
permuteGPAT++,
permuteSmooth,
plotHaps,
popStats,
segmentFst,
segmentIhs,
sequenceDiversity,
smoother,
vcf2bed.py,
vcf2dag,
vcf2fasta,
vcf2sqlite.py,
vcf2tsv,
vcf_strip_extra_headers,
vcfaddinfo,
vcfafpath,
vcfallelicprimitives,
vcfaltcount,
vcfannotate,
vcfannotategenotypes,
vcfbiallelic,
vcfbreakmulti,
vcfcat,
vcfcheck,
vcfclassify,
vcfcleancomplex,
vcfclearid,
vcfclearinfo,
vcfcombine,
vcfcommonsamples,
vcfcomplex,
vcfcountalleles,
vcfcreatemulti,
vcfdistance,
vcfecho,
vcfentropy,
vcfevenregions,
vcffilter,
vcffirstheader,
vcffixup,
vcfflatten,
vcfgeno2alleles,
vcfgeno2haplo,
vcfgenosamplenames,
vcfgenosummarize,
vcfgenotypecompare,
vcfgenotypes,
vcfglbound,
vcfglxgt,
vcfgtcompare.sh,
vcfhetcount,
vcfhethomratio,
vcfindelproximity,
vcfindels,
vcfindex,
vcfinfo2qual,
vcfinfosummarize,
vcfintersect,
vcfjoincalls,
vcfkeepgeno,
vcfkeepinfo,
vcfkeepsamples,
vcfld,
vcfleftalign,
vcflength,
vcfmultiallelic,
vcfmultiway,
vcfmultiwayscripts,
vcfnobiallelicsnps,
vcfnoindels,
vcfnosnps,
vcfnulldotslashdot,
vcfnullgenofields,
vcfnumalt,
vcfoverlay,
vcfparsealts,
vcfplotaltdiscrepancy.r,
vcfplotaltdiscrepancy.sh,
vcfplotsitediscrepancy.r,
vcfplottstv.sh,
vcfprimers,
vcfprintaltdiscrepancy.r,
vcfprintaltdiscrepancy.sh,
vcfqual2info,
vcfqualfilter,
vcfrandom,
vcfrandomsample,
vcfregionreduce,
vcfregionreduce_and_cut,
vcfregionreduce_pipe,
vcfregionreduce_uncompressed,
vcfremap,
vcfremoveaberrantgenotypes,
vcfremovenonATGC,
vcfremovesamples,
vcfroc,
vcfsample2info,
vcfsamplediff,
vcfsamplenames,
vcfsitesummarize,
vcfsnps,
vcfsort,
vcfstats,
vcfstreamsort,
vcfuniq,
vcfuniqalleles,
vcfvarstats,
vcfwave,
wcFst
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 9 | 41 | 93 |
| Installs on Request | 9 | 41 | 93 |
| Build Errors | 0 |