bismark
Install command:
brew install bismarkBisulfite read mapper and methylation caller
https://github.com/FelixKrueger/Bismark
License: GPL-3.0-only
Development: Pull requests
Formula JSON API: /api/formula/bismark.json
Formula code: bismark.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
tahoe | ✅ |
|---|---|---|
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ |
Current versions:
| stable | ✅ | 3.1.0 |
| head | ⚡️ | HEAD |
Depends on:
| bowtie2 | 2.5.5 | Fast and sensitive gapped read aligner |
| minimap2 | 2.31 | Versatile pairwise aligner for genomic and spliced nucleotide sequences |
Depends on when building from source:
| rust | 1.98.1 | Safe, concurrent, practical language |
Binaries:
NOMe_filtering,
bam2nuc,
bismark,
bismark2bedGraph,
bismark2report,
bismark2summary,
bismark_genome_preparation,
bismark_methylation_extractor,
coverage2cytosine,
deduplicate_bismark,
filter_non_conversion,
methylation_consistency
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 8 | 44 | 44 |
| Installs on Request | 8 | 44 | 44 |
| Build Errors | 0 |