bismark
Install command:
brew install bismarkBisulfite read mapper and methylation caller
https://github.com/FelixKrueger/Bismark
License: GPL-3.0-only
Development: Pull requests
Formula JSON API: /api/formula/bismark.json
Formula code: bismark.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
tahoe | ✅ |
|---|---|---|
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ | |
Current versions:
| stable | ✅ | 3.0.0 |
| head | ⚡️ | HEAD |
Depends on:
| bowtie2 | 2.5.5 | Fast and sensitive gapped read aligner |
| minimap2 | 2.31 | Versatile pairwise aligner for genomic and spliced nucleotide sequences |
Depends on when building from source:
| rust | 1.96.1 | Safe, concurrent, practical language |
Analytics:
| Installs (30 days) | |
|---|---|
bismark |
22 |
| Installs on Request (30 days) | |
bismark |
22 |
| Build Errors (30 days) | |
bismark |
0 |
| Installs (90 days) | |
bismark |
22 |
| Installs on Request (90 days) | |
bismark |
22 |
| Installs (365 days) | |
bismark |
22 |
| Installs on Request (365 days) | |
bismark |
22 |