freebayes
Install command:
brew install freebayesBayesian haplotype-based genetic polymorphism discovery and genotyping
https://github.com/freebayes/freebayes
License: MIT
Formula JSON API: /api/formula/freebayes.json
Formula code: freebayes.rb on GitHub
Bottle (binary package) installation support provided for:
| Apple Silicon | sequoia | ✅ |
|---|---|---|
| sonoma | ✅ | |
| ventura | ✅ | |
| Intel | sonoma | ✅ |
| ventura | ✅ | |
| 64-bit linux | ✅ | |
Current versions:
| stable | ✅ | 1.3.8 |
| head | ⚡️ | HEAD |
Depends on:
| htslib | 1.21 | C library for high-throughput sequencing data formats |
| xz | 5.6.3 | General-purpose data compression with high compression ratio |
Depends on when building from source:
| cmake | 3.31.3 | Cross-platform make |
| pybind11 | 2.13.6 | Seamless operability between C++11 and Python |
| simde | 0.8.2 | Implementations of SIMD intrinsics for systems which don't natively support them |
| libomp | 19.1.6 | LLVM's OpenMP runtime library |
| meson | 1.6.1 | Fast and user friendly build system |
| ninja | 1.12.1 | Small build system for use with gyp or CMake |
| pkgconf | 2.3.0 | Package compiler and linker metadata toolkit |
Analytics:
| Installs (30 days) | |
|---|---|
freebayes |
36 |
| Installs on Request (30 days) | |
freebayes |
34 |
| Build Errors (30 days) | |
freebayes |
0 |
| Installs (90 days) | |
freebayes |
87 |
| Installs on Request (90 days) | |
freebayes |
85 |
| Installs (365 days) | |
freebayes |
397 |
| Installs on Request (365 days) | |
freebayes |
358 |
