freebayes

Install command:
brew install freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping

https://github.com/freebayes/freebayes

License: MIT

Formula JSON API: /api/formula/freebayes.json

Formula code: freebayes.rb on GitHub

Bottle (binary package) installation support provided for:

macOS on
Apple Silicon
sequoia
sonoma
ventura
macOS on
Intel
sonoma
ventura
Linux ARM64
x86_64

Current versions:

stable 1.3.9
head ⚡️ HEAD

Depends on:

htslib 1.21 C library for high-throughput sequencing data formats

Depends on when building from source:

cmake 4.0.1 Cross-platform make
meson 1.8.0 Fast and user friendly build system
ninja 1.12.1 Small build system for use with gyp or CMake
pkgconf 2.4.3 Package compiler and linker metadata toolkit
pybind11 2.13.6 Seamless operability between C++11 and Python
simde 0.8.2 Implementations of SIMD intrinsics for systems which don't natively support them
wfa2-lib 2.3.5 Wavefront alignment algorithm library v2
xz 5.8.1 General-purpose data compression with high compression ratio
libomp 20.1.4 LLVM's OpenMP runtime library

Analytics:

Installs (30 days)
freebayes 16
Installs on Request (30 days)
freebayes 15
Build Errors (30 days)
freebayes 0
Installs (90 days)
freebayes 90
Installs on Request (90 days)
freebayes 86
Installs (365 days)
freebayes 376
Installs on Request (365 days)
freebayes 350
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