freebayes

Install command:
brew install freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping

https://github.com/freebayes/freebayes

License: MIT

Formula JSON API: /api/formula/freebayes.json

Formula code: freebayes.rb on GitHub

Bottle (binary package) installation support provided for:

Apple Silicon sequoia
sonoma
ventura
Intel sonoma
ventura
64-bit linux

Current versions:

stable 1.3.8
head ⚡️ HEAD

Depends on:

htslib 1.21 C library for high-throughput sequencing data formats
xz 5.6.3 General-purpose data compression with high compression ratio

Depends on when building from source:

cmake 3.31.2 Cross-platform make
pybind11 2.13.6 Seamless operability between C++11 and Python
simde 0.8.2 Implementations of SIMD intrinsics for systems which don't natively support them
libomp 19.1.5 LLVM's OpenMP runtime library
meson 1.6.0 Fast and user friendly build system
ninja 1.12.1 Small build system for use with gyp or CMake
pkgconf 2.3.0 Package compiler and linker metadata toolkit

Analytics:

Installs (30 days)
freebayes 30
Installs on Request (30 days)
freebayes 29
Build Errors (30 days)
freebayes 0
Installs (90 days)
freebayes 87
Installs on Request (90 days)
freebayes 86
Installs (365 days)
freebayes 398
Installs on Request (365 days)
freebayes 355
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