abricate
Install command:
brew install abricateFind antimicrobial resistance and virulence genes in contigs
https://github.com/tseemann/abricate
License: GPL-2.0-only
Formula JSON API: /api/formula/abricate.json
Bottle JSON API: /api/bottle/abricate.json
Formula code: abricate.rb on GitHub
Bottle (binary package) installation support provided for:
| Intel | monterey | ✅ |
|---|---|---|
| big sur | ✅ | |
| catalina | ✅ | |
| mojave | ✅ | |
| 64-bit linux | ✅ | |
| Apple Silicon | big sur | ✅ |
Current versions:
| stable | ✅ | 1.0.1 |
| head | ⚡️ | HEAD |
Depends on:
| bioperl | 1.7.8 | Perl tools for bioinformatics, genomics and life science |
| blast | 2.13.0 | Basic Local Alignment Search Tool |
| openssl@1.1 | 1.1.1p | Cryptography and SSL/TLS Toolkit |
| perl | 5.34.0 | Highly capable, feature-rich programming language |
Depends on when building from source:
| cpanminus | 1.7046 | Get, unpack, build, and install modules from CPAN |
Analytics (macOS):
| Installs (30 days) | |
|---|---|
abricate |
29 |
| Installs on Request (30 days) | |
abricate |
28 |
| Build Errors (30 days) | |
abricate |
0 |
| Installs (90 days) | |
abricate |
89 |
| Installs on Request (90 days) | |
abricate |
88 |
| Installs (365 days) | |
abricate |
268 |
| Installs on Request (365 days) | |
abricate |
266 |
Analytics (Linux):
| Installs (30 days) | |
|---|---|
abricate |
4 |
| Installs on Request (30 days) | |
abricate |
4 |
| Build Errors (30 days) | |
abricate |
0 |
| Installs (90 days) | |
abricate |
15 |
| Installs on Request (90 days) | |
abricate |
12 |
| Installs (365 days) | |
abricate |
61 |
| Installs on Request (365 days) | |
abricate |
52 |
