annotsv

Install command: 
brew install annotsv

Annotation and ranking of structural variations

https://lbgi.fr/AnnotSV/

License: GPL-3.0-or-later

Development: Pull requests

Formula JSON API: /api/formula/annotsv.json

Formula code: annotsv.rb on GitHub

Bottle (binary package) installation support provided.

Current versions:

stable ✅ 3.5.10
head ⚡️ HEAD

Depends on:

bcftools 1.24 Tools for BCF/VCF files and variant calling from samtools
bedtools 2.31.1 Tools for genome arithmetic (set theory on the genome)
tcl-tk 9.1.0 Tool Command Language

Binaries: AnnotSV

The annotation data sources are not bundled. Download them from
    https://github.com/lgmgeo/AnnotSV#readme
and pass the directory with `AnnotSV -annotationsDir <path>`.

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