breseq
Install command:
brew install breseqComputational pipeline for finding mutations in short-read DNA resequencing data
License: GPL-2.0-or-later AND MIT AND BSD-3-Clause
Development: Pull requests
Formula JSON API: /api/formula/breseq.json
Formula code: breseq.rb on GitHub
Bottle (binary package) installation support provided for:
| macOS on Apple Silicon |
tahoe | ✅ |
|---|---|---|
| sequoia | ✅ | |
| sonoma | ✅ | |
| macOS on Intel |
sonoma | ✅ |
| Linux | ARM64 | ✅ |
| x86_64 | ✅ | |
Current versions:
| stable | ✅ | 0.40.2 |
| head | ⚡️ | HEAD |
Depends on:
| bowtie2 | 2.5.5 | Fast and sensitive gapped read aligner |
| r | 4.6.1 | Software environment for statistical computing |
Analytics:
| 30 days | 90 days | 365 days | |
|---|---|---|---|
| Installs | 19 | 61 | 293 |
| Installs on Request | 19 | 61 | 293 |
| Build Errors | 0 |