breseq

Install command: 
brew install breseq

Computational pipeline for finding mutations in short-read DNA resequencing data

https://barricklab.org/breseq

License: GPL-2.0-or-later AND MIT AND BSD-3-Clause

Development: Pull requests

Formula JSON API: /api/formula/breseq.json

Formula code: breseq.rb on GitHub

Bottle (binary package) installation support provided for:

macOS on
Apple Silicon		 tahoe ✅
sequoia ✅
sonoma ✅
macOS on
Intel		 sonoma ✅
Linux ARM64 ✅
x86_64 ✅

Current versions:

stable ✅ 0.40.1
head ⚡️ HEAD

Depends on:

bowtie2 2.5.5 Fast and sensitive gapped read aligner
r 4.6.0 Software environment for statistical computing

Depends on when building from source:

autoconf 2.73 Automatic configure script builder
automake 1.18.1 Tool for generating GNU Standards-compliant Makefiles
libtool 2.5.4 Generic library support script

Analytics:

Installs (30 days)
breseq 64
Installs on Request (30 days)
breseq 64
Build Errors (30 days)
breseq 8
Installs (90 days)
breseq 132
Installs on Request (90 days)
breseq 132
Installs (365 days)
breseq 253
Installs on Request (365 days)
breseq 253